خالد أحمد عبدالله الطيف
عضو هيئة تدريس قار
المؤهل العلمي: دكتوراه
الدرجة العلمية: أستاذ مساعد
التخصص: Artificial Intelligence (Intelligent System) - Computer Science
تحليل البيانات - كلية المحاسبة
المنشورات العلمية
Automatic annotation of retinal layers in optical coherence tomography images
Journal ArticleEarly diagnosis of retinal OCT images has been shown to curtail blindness and visual impairments. However, the advancement of ophthalmic imaging technologies produces an ever-growing scale of retina images, both in volume and variety, which overwhelms the ophthalmologist ability to segment these images. While many automated methods exist, speckle noise and intensity inhomogeneity negatively impacts the performance of these methods. We present a comprehensive and fully automatic method for annotation of retinal layers in OCT images comprising of fuzzy histogram hyperbolisation (FHH) and graph cut methods to segment 7 retinal layers across 8 boundaries. The FHH handles speckle noise and inhomogeneity in the preprocessing step. Then the normalised vertical image gradient, and it’s inverse to represent image intensity in calculating two adjacency matrices and then the FHH reassigns the edge-weights to make edges along retinal boundaries have a low cost, and graph cut method identifies the shortest-paths (layer boundaries). The method is evaluated on 150 B-Scan images, 50 each from the temporal, foveal and nasal regions were used in our study. Promising experimental results have been achieved with high tolerance and adaptability to contour variance and pathological inconsistency of the retinal layers in all (temporal, foveal and nasal) regions. The method also achieves high accuracy, sensitivity, and Dice score of 0.98360, 0.9692 and 0.9712, respectively in segmenting the retinal nerve fibre layer. The annotation can facilitate eye examination by providing accurate results. The integration of the vertical gradients into the graph cut framework, which captures the unique characteristics of retinal structures, is particularly useful in finding the actual minimum paths across multiple retinal layer boundaries. Prior knowledge plays an integral role in image segmentation.
Khalid Ahmad A Eltayef, (11-2019), Journal of Medical Systems: Springer, 336 (43), 25-40
Min-cut segmentation of retinal oct images
Conference paperOptical Coherence Tomography (OCT) is one of the most vital tools for diagnosing and tracking progress of medication of various retinal disorders. Many methods have been proposed to aid with the analysis of retinal images due to the intricacy of retinal structures, the tediousness of manual segmentation and variation from different specialists. However image artifacts, in addition to inhomogeneity in pathological structures, remain a challenge, with negative influence on the performance of segmentation algorithms. In this paper we present an automatic retinal layer segmentation method, which comprises of fuzzy histogram hyperbolization and graph cut methods. We impose hard constraints to limit search region to sequentially segment 8 boundaries and 7 layers of the retina on 150 OCT B-Sans images, 50 each from the temporal, nasal and center of foveal regions. Our method shows positive results, with additional tolerance and adaptability to contour variance and pathological inconsistence of the retinal structures in all regions.
Khalid Ahmad A Eltayef, (08-2019), 11th International Joint Conference, BIOSTEC 2018, Funchal, Madeira, Portugal: Springer, 86-99
Graph-Cut Segmentation of Retinal Layers from OCT Images.
Conference paperThe segmentation of various retinal layers is vital for diagnosing and tracking progress of medication of various ocular diseases. Due to the complexity of retinal structures, the tediousness of manual segmentation and variation from different specialists, many methods have been proposed to aid with this analysis. However image artifacts, in addition to inhomogeneity in pathological structures, remain a challenge, with negative influence on the performance of segmentation algorithms. Previous attempts normally pre-process the images or model the segmentation to handle the obstruction but it still remains an area of active research, especially in relation to the graph based algorithms. In this paper we present an automatic retinal layer segmentation method, which is comprised of fuzzy histogram hyperbolization and graph cut methods to segment 8 boundaries and 7 layers of the retina on 150 OCT B-Sans images, 50 each from the temporal, nasal and centre of foveal region. Our method shows positive results, with additional tolerance and adaptability to contour variance and pathological inconsistency of the retinal structures in all regions.
Khalid Ahmad A Eltayef, (01-2018), 11th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2018: SCITEPRESS – Science and Technology, 35-42
Skin cancer detection in dermoscopy images using sub-region features
Conference paperIn the medical field, the identification of skin cancer (Malignant Melanoma) in dermoscopy images is still a challenging task for radiologists and researchers. Due to its rapid increase, the need for decision support systems to assist the radiologists to detect it in early stages becomes essential and necessary. Computer Aided Diagnosis (CAD) systems have significant potential to increase the accuracy of its early detection. Typically, CAD systems use various types of features to characterize skin lesions. The features are often concatenated into one vector (early fusion) to represent the image. In this paper, we present a novel method for melanoma detection from images. First the lesions are segmented by combining Particle Swarm Optimization and Markov Random Field methods. Then the K-means is applied on the segmented lesions to separate them into homogeneous clusters, from which important features are extracted. Finally, an Artificial Neural Network with Radial Basis Function is applied for the detection of melanoma. The method was tested on 200 dermoscopy images. The experimental results show that the proposed method achieved higher accuracy in terms of melanoma detection, compared to alternative methods.
Khalid Ahmad A Eltayef, (10-2017), 16th International Symposium, IDA 2017, London, UK: Springer, 75-86
Lesion Segmentation in Dermoscopy Images Using Particle Swarm Optimization and Markov Random Field
Conference paperMalignant melanoma is one of the most rapidly increasing cancers globally and it is the most dangerous form of human skin cancer. Dermoscopy is one of the major imaging modalities used in the diagnosis of melanoma. Early detection of melanoma can be helpful and usually curable. Due to the difficulty for dermatologists in the interpretation of dermoscopy images, Computer Aided Diagnosis systems can be very helpful to facilitate the early detection. The automated detection of the lesion borders is one of the most important steps in dermoscopic image analysis. In this paper, we present a fully automated method for melanoma border detection using image processing techniques. The hair and several noises aredetected and removed by applying a bank of directional filters and Image Inpainting method respectively. A hybrid method is developed by combining Particle Swarm Optimization and Markov Random Field methods, in order to delineate the border of the lesion area in the images. The method was tested on a dataset of 200 dermoscopic images, and the experimental results show that our method is superior in terms of the accuracy of drawing the lesion borders compared to alternative methods.
Khalid Ahmad A Eltayef, (06-2017), 2017 IEEE 30th International Symposium on Computer-Based Medical Systems (CBMS): IEEE, 739-744
Detection of melanoma skin cancer in dermoscopy images
Conference paperMalignant melanoma is the most hazardous type of human skin cancer and its incidence has been rapidly increasing. Early detection of malignant melanoma in dermoscopy images is very important and critical, since its detection in the early stage can be helpful to cure it. Computer Aided Diagnosis systems can be very helpful to facilitate the early detection of cancers for dermatologists. In this paper, we present a novel method for the detection of melanoma skin cancer. To detect the hair and several noises from images, pre-processing step is carried out by applying a bank of directional filters. And therefore, Image inpainting method is implemented to fill in the unknown regions. Fuzzy C-Means and Markov Random Field methods are used to delineate the border of the lesion area in the images. The method was evaluated on a dataset of 200 dermoscopic images, and superior results were produced.
Khalid Ahmad A Eltayef, (02-2017), Journal of physics: Journal of physics, 14-27
Detection of pigment networks in dermoscopy images
Conference paperOne of the most important structures in dermoscopy images is the pigment network, which is also one of the most challenging and fundamental task for dermatologists in early detection of melanoma. This paper presents an automatic system to detect pigment network from dermoscopy images. The design of the proposed algorithm consists of four stages. First, a pre-processing algorithm is carried out in order to remove the noise and improve the quality of the image. Second, a bank of directional filters and morphological connected component analysis are applied to detect the pigment networks. Third, features are extracted from the detected image, which can be used in the subsequent stage. Fourth, the classification process is performed by applying feed-forward neural network, in order to classify the region as either normal or abnormal skin. The method was tested on a dataset of 200 dermoscopy images
Khalid Ahmad A Eltayef, (02-2017), Journal of physics: Journal of physics, 30-45